Transcript: PHKA1-AS1:1

Basic information

LNCipedia transcript ID: PHKA1-AS1:1 
LNCipedia gene ID: PHKA1-AS1
RefSeq ID: NR_110391
Location (hg19): chrX:71908799-71932190
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 599 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_110391; NR_110391.1
Alternative gene names: ; LOC101928259


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.3365 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PHKA1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTC1B-1:2
4.0 PHKA1-AS1:1
4.1 PHKA1-AS1:1
5.0 PHKA1-AS1:1
5.1 PHKA1-AS1:1
5.2 PHKA1-AS1:1