Transcript: PHKA1-AS1:2

Basic information

LNCipedia transcript ID: PHKA1-AS1:2 
HGNC Gene Symbol: PHKA1-AS1    
HGNC Full Gene Name: PHKA1 antisense RNA 1
Ensembl Gene ID: ENSG00000231944
Ensembl Transcript ID: ENST00000420998
Location (hg19): chrX:71908800-71932190
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 598 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420998.1; PHKA1-AS1-001; OTTHUMT00000057205.1; NONHSAT137502
Alternative gene names: ENSG00000231944.1; PHKA1-AS1; OTTHUMG00000021815.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -101.3365 non-coding 
CPAT coding probability 3.61% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PHKA1-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DMRTC1B-1:1
4.0 PHKA1-AS1:2
4.1 PHKA1-AS1:2
5.0 PHKA1-AS1:2
5.1 PHKA1-AS1:2
5.2 PHKA1-AS1:2