Transcript: PITPNA-AS1:2

Basic information

LNCipedia transcript ID: PITPNA-AS1:2 
HGNC Gene Symbol: PITPNA-AS1    
HGNC Full Gene Name: PITPNA antisense RNA 1
Ensembl Gene ID: ENSG00000236618
Ensembl Transcript ID: ENST00000425081
Location (hg19): chr17:1420225-1421390
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 542 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425081.2; AC100748.2-001; OTTHUMT00000255247.2
Alternative gene names: ENSG00000236618.2; AC100748.2; OTTHUMG00000132194.2; PITPNA-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -154.0606 non-coding 
CPAT coding probability 0.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PITPNA-AS1:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR81-1:1
4.0 PITPNA-AS1:2
4.1 PITPNA-AS1:2
5.0 PITPNA-AS1:2
5.1 PITPNA-AS1:2
5.2 PITPNA-AS1:2