Transcript: PKP4-AS1:5

Basic information

LNCipedia transcript ID: PKP4-AS1:5 
HGNC Gene Symbol: PKP4-AS1    
HGNC Full Gene Name: PKP4 antisense RNA 1
Ensembl Gene ID: ENSG00000204380
Ensembl Transcript ID: ENST00000342892
RefSeq ID: NR_135242
Location (hg19): chr2:159514849-159591514
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 4067 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000342892.4; AC005042.4-001; OTTHUMT00000333244.1; NONHSAT075094; NR_135242.1
Alternative gene names: ENSG00000204380.2; AC005042.4; OTTHUMG00000153965.1; ENSG00000204380.4; PKP4-AS1; LOC100129029


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -40.9971 non-coding 
CPAT coding probability 16.76% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PKP4-AS1:5 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCDC148-1:1
4.0 lnc-CCDC148-1:1
4.1 lnc-CCDC148-1:1
5.0 lnc-CCDC148-1:1
5.1 PKP4-AS1:2
5.2 PKP4-AS1:5