Transcript: PLS1-AS1:1

Basic information

LNCipedia transcript ID: PLS1-AS1:1 
HGNC Gene Symbol: PLS1-AS1    
HGNC Full Gene Name: PLS1 antisense RNA 1
Ensembl Gene ID: ENSG00000239641
Ensembl Transcript ID: ENST00000485338
Location (hg19): chr3:142373626-142375587
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 346 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000485338.1; PLS1-AS1-001; OTTHUMT00000354433.1; NONHSAT092478
Alternative gene names: ENSG00000239641.1; PLS1-AS1; OTTHUMG00000159291.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -109.6202 non-coding 
CPAT coding probability 0.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLS1-AS1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ATR-1:1
4.0 PLS1-AS1:1
4.1 PLS1-AS1:1
5.0 PLS1-AS1:1
5.1 PLS1-AS1:1
5.2 PLS1-AS1:1