Transcript: PLUT:6

Basic information

LNCipedia transcript ID: PLUT:6 
LNCipedia gene ID: PLUT
Location (hg19): chr13:28403906-28495541
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1992 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000499662; ENST00000499662.1; PDX1-AS1-001; OTTHUMT00000409665.1; NONHSAT032675
Alternative gene names: ENSG00000247381; RP11-438F9.2; ENSG00000247381.1; PDX1-AS1; OTTHUMG00000170578.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -36.2203 non-coding 
CPAT coding probability 12.30% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PLUT:6 yes no no no

Available literature

  1. Akerman (2017), Human Pancreatic β Cell lncRNAs Control Cell-Specific Regulatory Networks., Cell Metab.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CDX2-2:1
3.1 lnc-CDX2-2:1
4.0 PDX1-AS1:1
4.1 PDX1-AS1:1
5.0 PDX1-AS1:1
5.1 PLUT:2
5.2 PLUT:6