Transcript: POC1B-AS1:35

Basic information

LNCipedia transcript ID: POC1B-AS1:35 
LNCipedia gene ID: POC1B-AS1
Location (hg19): chr12:89919361-89934149
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 478 bp
Exons: 2
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1564:1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -146.4921 non-coding 
CPAT coding probability 14.29% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POC1B-AS1:35 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TMTC3-14:5
4.1 lnc-TMTC3-14:5
5.0 lnc-TMTC3-14:5
5.1 POC1B-AS1:18
5.2 POC1B-AS1:35