Transcript: POC1B-AS1:37

Basic information

LNCipedia transcript ID: POC1B-AS1:37 
LNCipedia gene ID: POC1B-AS1
Location (hg19): chr12:89919431-89934079
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 338 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000605233.1
Alternative gene names: ENSG00000270344.1; RP11-734K2.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -146.4921 non-coding 
CPAT coding probability 14.38% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
POC1B-AS1:37 no no no no

Available literature

  1. Liu (2017), CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells., Science


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMTC3-14:4
4.0 lnc-TMTC3-14:4
4.1 lnc-TMTC3-14:4
5.0 lnc-TMTC3-14:4
5.1 POC1B-AS1:21
5.2 POC1B-AS1:37