Transcript: PPP1R26-AS1:17

Basic information

LNCipedia transcript ID: PPP1R26-AS1:17 
LNCipedia gene ID: PPP1R26-AS1
Location (hg19): chr9:138349963-138372580
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 6186 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000225361.3|ENCT00000461980.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.9042 non-coding 
CPAT coding probability 7.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP1R26-AS1:17 no no no no

Available literature

  1. Xu (2017), Oncogenic long noncoding RNA landscape in breast cancer., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PPP1R26-AS1:17
5.0 PPP1R26-AS1:17
5.1 PPP1R26-AS1:17
5.2 PPP1R26-AS1:17