Transcript: PPP1R26-AS1:4

Basic information

LNCipedia transcript ID: PPP1R26-AS1:4 
LNCipedia gene ID: PPP1R26-AS1
Location (hg19): chr9:138363011-138372564
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 875 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT135448
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 4.1937 non-coding 
CPAT coding probability 7.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP1R26-AS1:4 no no no no

Available literature

  1. Xu (2017), Oncogenic long noncoding RNA landscape in breast cancer., Mol. Cancer


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf116-2:5
4.0 PPP1R26-AS1:4
4.1 PPP1R26-AS1:4
5.0 PPP1R26-AS1:4
5.1 PPP1R26-AS1:4
5.2 PPP1R26-AS1:4