Transcript: PPP2R2B-IT1:1

Basic information

LNCipedia transcript ID: PPP2R2B-IT1:1 
HGNC Gene Symbol: PPP2R2B-IT1    
HGNC Full Gene Name: PPP2R2B intronic transcript 1
Ensembl Gene ID: ENSG00000249553
Ensembl Transcript ID: ENST00000505921
RefSeq ID: NR_047115
Location (hg19): chr5:146293770-146299069
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 447 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000505921.1; PPP2R2B-IT1-001; OTTHUMT00000372944.1; NONHSAT104417; NR_047115; NR_047115.1
Alternative gene names: ENSG00000249553.1; PPP2R2B-IT1; OTTHUMG00000129687.3;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -197.4464 non-coding 
CPAT coding probability 0.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PPP2R2B-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GPR151-2:1
4.0 PPP2R2B-IT1:1
4.1 PPP2R2B-IT1:1
5.0 PPP2R2B-IT1:1
5.1 PPP2R2B-IT1:1
5.2 PPP2R2B-IT1:1