Transcript: PRNCR1:2

Basic information

LNCipedia transcript ID: PRNCR1:2 
HGNC Gene Symbol: PRNCR1    
HGNC Full Gene Name: prostate cancer associated non-coding RNA 1
Ensembl Gene ID: ENSG00000282961
Ensembl Transcript ID: ENST00000635449
Location (hg19): chr8:128092119-128104845
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 12727 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000635449.1
Alternative gene names: ENSG00000282961.1; PRNCR1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 30.7546 non-coding 
CPAT coding probability 11.62% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRNCR1:2 no no no no

Available literature

  1. Li (2013), Association between polymorphisms in long non-coding RNA PRNCR1 in 8q24 and risk of colorectal cancer., J. Exp. Clin. Cancer Res.
  2. Yang (2013), lncRNA-dependent mechanisms of androgen-receptor-regulated gene activation programs., Nature
  3. Chung (2011), Association of a novel long non-coding RNA in 8q24 with prostate cancer susceptibility., Cancer Sci.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 PRNCR1:2
4.1 PRNCR1:2
5.0 PRNCR1:2
5.1 PRNCR1:2
5.2 PRNCR1:2