Transcript: PROX1-AS1:31

Basic information

LNCipedia transcript ID: PROX1-AS1:31 
HGNC Gene Symbol: PROX1-AS1    
HGNC Full Gene Name: PROX1 antisense RNA 1
Ensembl Gene ID: ENSG00000230461
Ensembl Transcript ID: ENST00000601335
Location (hg19): chr1:214068777-214140274
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 691 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT009443; ENST00000601335.1; ENST00000601335.5
Alternative gene names: ENSG00000230461.4; PROX1-AS1; ENSG00000230461.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -13.0711 non-coding 
CPAT coding probability 10.36% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PTPN14-3:15
4.0 PROX1-AS1:31
4.1 PROX1-AS1:31
5.0 PROX1-AS1:31
5.1 PROX1-AS1:31
5.2 PROX1-AS1:31