Transcript: PROX1-AS1:34

Basic information

LNCipedia transcript ID: PROX1-AS1:34 
LNCipedia gene ID: PROX1-AS1
Location (hg19): chr1:213992978-214139608
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3301 bp
Exons: 5
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012
Alternative transcript names: ENST00000433082; ENST00000433082.1; PROX1-AS1-001; OTTHUMT00000089728.1
Alternative gene names: ENSG00000230461; RP11-478J18.1; ENSG00000230461.2; PROX1-AS1; OTTHUMG00000036947.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -79.9891 non-coding 
CPAT coding probability 11.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PROX1-AS1:34 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPN14-2:1
3.1 lnc-PTPN14-3:2
4.0 PROX1-AS1:34
4.1 PROX1-AS1:34
5.0 PROX1-AS1:34
5.1 PROX1-AS1:34
5.2 PROX1-AS1:34