Transcript: PRR7-AS1:2

Basic information

LNCipedia transcript ID: PRR7-AS1:2 
LNCipedia gene ID: PRR7-AS1
RefSeq ID: NR_038916
Location (hg19): chr5:176864890-176874945
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1401 bp
Exons: 3
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT105416; NR_038916; NR_038916.1
Alternative gene names: ; PRR7-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 0.9757 non-coding 
CPAT coding probability 4.53% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRR7-AS1:2 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-DBN1-2:5
4.0 PRR7-AS1:2
4.1 PRR7-AS1:2
5.0 PRR7-AS1:2
5.1 PRR7-AS1:2
5.2 PRR7-AS1:2