Transcript: PRR7-AS1:4

Basic information

LNCipedia transcript ID: PRR7-AS1:4 
HGNC Gene Symbol: PRR7-AS1    
HGNC Full Gene Name: PRR7 antisense RNA 1
Ensembl Gene ID: ENSG00000246334
Ensembl Transcript ID: ENST00000425316
Location (hg19): chr5:176865504-176874700
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 741 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000425316; ENST00000425316.3; RP11-1334A24.4-001; OTTHUMT00000373186.1
Alternative gene names: ENSG00000246334; RP11-1334A24.4; ENSG00000246334.2; OTTHUMG00000163400.1; PRR7-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.0555 non-coding 
CPAT coding probability 4.46% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PRR7-AS1:4 no no no no

Available literature

  1. Strausberg (2002), Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences., Proc. Natl. Acad. Sci. U.S.A.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-DBN1-2:1
3.1 lnc-DBN1-2:1
4.0 PRR7-AS1:4
4.1 PRR7-AS1:4
5.0 PRR7-AS1:4
5.1 PRR7-AS1:4
5.2 PRR7-AS1:4