Transcript: PSD2-AS1:17

Basic information

LNCipedia transcript ID: PSD2-AS1:17 
LNCipedia gene ID: PSD2-AS1
RefSeq ID: NR_105053
Location (hg19): chr5:139120932-139125808
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 414 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_105053; NR_105053.2
Alternative gene names: LOC101929696


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.8232 non-coding 
CPAT coding probability 1.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSD2-AS1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-NRG2-3:4
4.0 lnc-NRG2-3:4
4.1 lnc-NRG2-3:4
5.0 lnc-NRG2-3:4
5.1 PSD2-AS1:8
5.2 PSD2-AS1:17