Transcript: PSMA3-AS1:15

Basic information

LNCipedia transcript ID: PSMA3-AS1:15 
HGNC Gene Symbol: PSMA3-AS1    
HGNC Full Gene Name: PSMA3 antisense RNA 1
Ensembl Gene ID: ENSG00000257621
Ensembl Transcript ID: ENST00000555275
Location (hg19): chr14:58733607-58764840
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 903 bp
Exons: 4
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000555275.1; RP11-349A22.5-013; OTTHUMT00000412236.1; ENST00000555275.5
Alternative gene names: ENSG00000257621.2; RP11-349A22.5; OTTHUMG00000171179.2; ENSG00000257621.3; ENSG00000257621.7; PSMA3-AS1; FLJ31306


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.9694 non-coding 
CPAT coding probability 1.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSMA3-AS1:15 no no no no

Available literature

  1. Cabili (2015), Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution., Genome Biol.
  2. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMM9-2:7
4.0 PSMA3-AS1:15
4.1 PSMA3-AS1:15
5.0 PSMA3-AS1:15
5.1 PSMA3-AS1:15
5.2 PSMA3-AS1:15