Transcript: PSMA3-AS1:20

Basic information

LNCipedia transcript ID: PSMA3-AS1:20 
LNCipedia gene ID: PSMA3-AS1
Location (hg19): chr14:58753007-58753910
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 483 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000556804.1; RP11-349A22.5-010; OTTHUMT00000412246.1; NONHSAT037137
Alternative gene names: ENSG00000257621.2; RP11-349A22.5; OTTHUMG00000171179.2; FLJ31306


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -6.4806 non-coding 
CPAT coding probability 0.54% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSMA3-AS1:20 no no no no

Available literature

  1. Cabili (2015), Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution., Genome Biol.
  2. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMM9-2:12
4.0 PSMA3-AS1:20
4.1 PSMA3-AS1:20
5.0 PSMA3-AS1:20
5.1 PSMA3-AS1:20
5.2 PSMA3-AS1:20