Transcript: PSMA3-AS1:3

Basic information

LNCipedia transcript ID: PSMA3-AS1:3 
LNCipedia gene ID: PSMA3-AS1
RefSeq ID: NR_029434
Location (hg19): chr14:58732083-58764855
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2483 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT037119; NR_029434; NR_029434.1
Alternative gene names: FLJ31306; PSMA3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 33.9694 non-coding 
CPAT coding probability 2.01% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSMA3-AS1:3 no no no no

Available literature

  1. Cabili (2015), Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution., Genome Biol.
  2. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TIMM9-2:19
4.0 PSMA3-AS1:3
4.1 PSMA3-AS1:3
5.0 PSMA3-AS1:3
5.1 PSMA3-AS1:3
5.2 PSMA3-AS1:3