Transcript: PSMA3-AS1:38

Basic information

LNCipedia transcript ID: PSMA3-AS1:38 
LNCipedia gene ID: PSMA3-AS1
Location (hg19): chr14:58752450-58764833
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 490 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000257621.3|ENST00000551597.2
Alternative gene names: FLJ31306


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -6.0561 non-coding 
CPAT coding probability 2.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSMA3-AS1:38 no no no no

Available literature

  1. Cabili (2015), Localization and abundance analysis of human lncRNAs at single-cell and single-molecule resolution., Genome Biol.
  2. Cogill (2014), Co-expression Network Analysis of Human lncRNAs and Cancer Genes., Cancer Inform


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PSMA3-AS1:38
5.0 PSMA3-AS1:38
5.1 PSMA3-AS1:38
5.2 PSMA3-AS1:38