Transcript: PSPC1-AS2:3

Basic information

LNCipedia transcript ID: PSPC1-AS2:3 
HGNC Gene Symbol: PSPC1-AS2    
HGNC Full Gene Name: PSPC1 antisense RNA 2
Ensembl Gene ID: ENSG00000226352
Ensembl Transcript ID: ENST00000423023
Location (hg19): chr13:20248764-20250024
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 376 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT032284; ENST00000423023.2
Alternative gene names: ENSG00000226352.2; RP11-523H24.3; PSPC1-AS2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.7103 non-coding 
CPAT coding probability 0.96% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PSPC1-AS2:3 yes no no no

Available literature

  1. Guo (2016), Protein-coding genes combined with long non-coding RNAs predict prognosis in esophageal squamous cell carcinoma patients as a novel clinical multi-dimensional signature., Mol Biosyst


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MPHOSPH8-4:1
4.0 lnc-MPHOSPH8-4:1
4.1 lnc-MPHOSPH8-4:1
5.0 lnc-MPHOSPH8-4:1
5.1 PSPC1-AS2:2
5.2 PSPC1-AS2:3