Transcript: PTCSC2:2

Basic information

LNCipedia transcript ID: PTCSC2:2 
LNCipedia gene ID: PTCSC2
Location (hg19): chr9:100568217-100568726
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 204 bp
Exons: 2
Sources: Hangauer et al., 2013
Alternative transcript names: FPKM1_group_33579_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 4.41% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTCSC2:2 no no no no

Available literature

  1. He (2015), Genetic predisposition to papillary thyroid carcinoma: involvement of FOXE1, TSHR, and a novel lincRNA gene, PTCSC2., J. Clin. Endocrinol. Metab.
  2. Porcu (2013), A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-C9orf156-3:2
4.0 PTCSC2:2
4.1 PTCSC2:2
5.0 PTCSC2:2
5.1 PTCSC2:2
5.2 PTCSC2:2