Transcript: PTCSC2:6

Basic information

LNCipedia transcript ID: PTCSC2:6 
LNCipedia gene ID: PTCSC2
Location (hg19): chr9:100566154-100615394
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 1652 bp
Exons: 5
Sources: FANTOM CAT (stringent)
Alternative transcript names: CATG00000109156.1|FTMT23300035107.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -5.5825 non-coding 
CPAT coding probability 7.28% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTCSC2:6 no no no no

Available literature

  1. He (2015), Genetic predisposition to papillary thyroid carcinoma: involvement of FOXE1, TSHR, and a novel lincRNA gene, PTCSC2., J. Clin. Endocrinol. Metab.
  2. Porcu (2013), A meta-analysis of thyroid-related traits reveals novel loci and gender-specific differences in the regulation of thyroid function., PLoS Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PTCSC2:6
5.0 PTCSC2:6
5.1 PTCSC2:6
5.2 PTCSC2:6