Transcript: PTOV1-AS1:2

Basic information

LNCipedia transcript ID: PTOV1-AS1:2 
LNCipedia gene ID: PTOV1-AS1
Ensembl Gene ID: ENSG00000268006
Ensembl Transcript ID: ENST00000596521
Location (hg19): chr19:50341896-50354933
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2155 bp
Exons: 4
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT067252; ENST00000596521.1
Alternative gene names: ENSG00000268006.1; PTOV1-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 142.2587 coding 
CPAT coding probability 2.05% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PTOV1-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-PNKP-1:4
4.0 PTOV1-AS1:2
4.1 PTOV1-AS1:2
5.0 PTOV1-AS1:2
5.1 PTOV1-AS1:2
5.2 PTOV1-AS1:2