Transcript: PTPRD-AS1:4

Basic information

LNCipedia transcript ID: PTPRD-AS1:4 
HGNC Gene Symbol: PTPRD-AS1    
HGNC Full Gene Name: PTPRD antisense RNA 1
Ensembl Gene ID: ENSG00000225706
Ensembl Transcript ID: ENST00000430766
Location (hg19): chr9:8858134-8861724
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1959 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430766; ENST00000430766.1; RP11-75C9.1-001; OTTHUMT00000051710.1; NONHSAT130193
Alternative gene names: ENSG00000225706; RP11-75C9.1; ENSG00000225706.1; OTTHUMG00000019543.1; PTPRD-AS1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -93.0888 non-coding 
CPAT coding probability 1.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS1:4 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-KDM4C-6:2
3.1 lnc-KDM4C-8:2
4.0 PTPRD-AS1:4
4.1 PTPRD-AS1:4
5.0 PTPRD-AS1:4
5.1 PTPRD-AS1:4
5.2 PTPRD-AS1:4