Transcript: PTPRD-AS2:2

Basic information

LNCipedia transcript ID: PTPRD-AS2:2 
LNCipedia gene ID: PTPRD-AS2
Location (hg19): chr9:10613202-10618218
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 636 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000429581; TCONS_00015648; ENST00000429581.1; RP11-87N24.2-001; OTTHUMT00000051722.1; NONHSAT130201
Alternative gene names: ENSG00000226717; XLOC_007280; linc-TYRP1-3; RP11-87N24.2; ENSG00000226717.1; OTTHUMG00000019549.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -60.3599 non-coding 
CPAT coding probability 6.22% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TYRP1-3:1
3.1 lnc-TYRP1-3:1
4.0 PTPRD-AS2:2
4.1 PTPRD-AS2:2
5.0 PTPRD-AS2:2
5.1 PTPRD-AS2:2
5.2 PTPRD-AS2:2