Transcript: PTPRD-AS2:3

Basic information

LNCipedia transcript ID: PTPRD-AS2:3 
HGNC Gene Symbol: PTPRD-AS2    
HGNC Full Gene Name: PTPRD antisense RNA 2 (head to head)
Ensembl Gene ID: ENSG00000226717
Ensembl Transcript ID: ENST00000429581
Location (hg19): chr9:10613202-10620420
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2838 bp
Exons: 3
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000429581.2
Alternative gene names: ENSG00000226717.2; RP11-87N24.2; PTPRD-AS2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 16.0546 non-coding 
CPAT coding probability 5.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRD-AS2:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TYRP1-3:3
4.0 PTPRD-AS2:3
4.1 PTPRD-AS2:3
5.0 PTPRD-AS2:3
5.1 PTPRD-AS2:3
5.2 PTPRD-AS2:3