Transcript: PTPRG-AS1:30

Basic information

LNCipedia transcript ID: PTPRG-AS1:30 
LNCipedia gene ID: PTPRG-AS1
Location (hg19): chr3:62279948-62304567
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 985 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000241472.2|ENST00000479588.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -127.5007 non-coding 
CPAT coding probability 1.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRG-AS1:30 yes no no no

Available literature

  1. Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
  2. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 PTPRG-AS1:30
5.0 PTPRG-AS1:30
5.1 PTPRG-AS1:30
5.2 PTPRG-AS1:30