Transcript: PTPRG-AS1:4

Basic information

LNCipedia transcript ID: PTPRG-AS1:4 
LNCipedia gene ID: PTPRG-AS1
RefSeq ID: NR_038282
Location (hg19): chr3:62247494-62304622
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2668 bp
Exons: 5
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT090176; NR_038282; NR_038282.1
Alternative gene names: ; PTPRG-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 128.3712 coding 
CPAT coding probability 2.51% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
PTPRG-AS1:4 yes no no no

Available literature

  1. Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
  2. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FEZF2-1:13
4.0 PTPRG-AS1:4
4.1 PTPRG-AS1:4
5.0 PTPRG-AS1:4
5.1 PTPRG-AS1:4
5.2 PTPRG-AS1:4