Transcript: PTPRG-AS1:7

Basic information

LNCipedia transcript ID: PTPRG-AS1:7 
HGNC Gene Symbol: PTPRG-AS1    
HGNC Full Gene Name: PTPRG antisense RNA 1
Ensembl Gene ID: ENSG00000241472
Ensembl Transcript ID: ENST00000479018
Location (hg19): chr3:62249604-62304610
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 560 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000479018; ENST00000479018.1; RP11-204J18.3-009; OTTHUMT00000351671.1; ENST00000479018.5
Alternative gene names: ENSG00000241472; RP11-204J18.3; ENSG00000241472.1; OTTHUMG00000158657.1; ENSG00000241472.2; PTPRG-AS1; ENSG00000241472.6;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -15.1817 non-coding 
CPAT coding probability 6.12% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
PTPRG-AS1:7 yes no no no

Available literature

  1. Iranpour (2016), Expression analysis of four long noncoding RNAs in breast cancer., Tumour Biol.
  2. Zhao (2014), Comprehensive characterization of cancer subtype associated long non-coding RNAs and their clinical implications., Sci Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-FEZF2-1:4
3.1 lnc-FEZF2-1:4
4.0 PTPRG-AS1:7
4.1 PTPRG-AS1:7
5.0 PTPRG-AS1:7
5.1 PTPRG-AS1:7
5.2 PTPRG-AS1:7

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