Transcript: RAB30-AS1:1

Basic information

LNCipedia transcript ID: RAB30-AS1:1 
HGNC Gene Symbol: RAB30-AS1    
HGNC Full Gene Name: RAB30 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000246067
Ensembl Transcript ID: ENST00000501011
Location (hg19): chr11:82783108-82784688
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 607 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000501011; ENST00000501011.2; RP11-113K21.5-001; OTTHUMT00000392426.1; ENST00000501011.6
Alternative gene names: ENSG00000246067; RP11-113K21.5; ENSG00000246067.2; OTTHUMG00000167010.1; ENSG00000246067.3; RAB30-AS1; ENSG00000246067.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 2 non-coding 
PhyloCSF score -130.662 non-coding 
CPAT coding probability 1.10% non-coding 
Bazzini small ORFs 1 coding 
seqAAMINKGVRRNRCWKVTKVERDVALALQVRRERE
orfFrame6.832421227
covF1Prop0.233333333

In stringent set: no

Locus conservation

Locus conservation?
RAB30-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCF11-1:1
3.1 lnc-PCF11-1:1
4.0 RAB30-AS1:1
4.1 RAB30-AS1:1
5.0 RAB30-AS1:1
5.1 RAB30-AS1:1
5.2 RAB30-AS1:1