Transcript: RAB30-AS1:23

Basic information

LNCipedia transcript ID: RAB30-AS1:23 
LNCipedia gene ID: RAB30-AS1
Location (hg19): chr11:82783397-82784754
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 860 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000530270; ENST00000530270.1; RP11-113K21.5-008; OTTHUMT00000392433.1; NONHSAT023379
Alternative gene names: ENSG00000246067; RP11-113K21.5; ENSG00000246067.2; OTTHUMG00000167010.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -130.662 non-coding 
CPAT coding probability 1.08% non-coding 
Bazzini small ORFs 1 coding 
orfFrame6.782521371
seqAAMINKGVRRNRCWKVTKVERDVALALQVRRERE
covF1Prop0.2

In stringent set: no

Locus conservation

Locus conservation?
RAB30-AS1:23 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PCF11-1:17
3.1 lnc-PCF11-1:17
4.0 RAB30-AS1:23
4.1 RAB30-AS1:23
5.0 RAB30-AS1:23
5.1 RAB30-AS1:23
5.2 RAB30-AS1:23