Transcript: RAD51-AS1:11

Basic information

LNCipedia transcript ID: RAD51-AS1:11 
LNCipedia gene ID: RAD51-AS1
Location (hg19): chr15:40977814-40987294
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2524 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000245849.2|HBMT00000497449.1
Alternative gene names: TODRA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 18.9538 non-coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAD51-AS1:11 yes no no no

Available literature

  1. Gazy (2015), TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RAD51-AS1:11
5.0 RAD51-AS1:11
5.1 RAD51-AS1:11
5.2 RAD51-AS1:11