Transcript: RAD51-AS1:7

Basic information

LNCipedia transcript ID: RAD51-AS1:7 
LNCipedia gene ID: RAD51-AS1
Location (hg19): chr15:40978360-40985395
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 7036 bp
Exons: 1
Sources: Sun and Gadad et al., 2015
Alternative transcript names: LncRNA1594:1
Alternative gene names: TODRA


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 23.6133 non-coding 
CPAT coding probability 5.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAD51-AS1:7 no no no no

Available literature

  1. Gazy (2015), TODRA, a lncRNA at the RAD51 Locus, Is Oppositely Regulated to RAD51, and Enhances RAD51-Dependent DSB (Double Strand Break) Repair., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 RAD51-AS1:7
4.1 RAD51-AS1:7
5.0 RAD51-AS1:7
5.1 RAD51-AS1:7
5.2 RAD51-AS1:7