Transcript: RALY-AS1:9

Basic information

LNCipedia transcript ID: RALY-AS1:9 
LNCipedia gene ID: RALY-AS1
Location (hg19): chr20:32577408-32579666
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 498 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00028653; NONHSAT079415
Alternative gene names: XLOC_013728; linc-PXMP4-2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -342.4268 non-coding 
CPAT coding probability 4.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RALY-AS1:9 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-EIF2S2-2:1
3.1 lnc-EIF2S2-2:1
4.0 RALY-AS1:9
4.1 RALY-AS1:9
5.0 RALY-AS1:9
5.1 RALY-AS1:9
5.2 RALY-AS1:9