Transcript: RAMP2-AS1:6

Basic information

LNCipedia transcript ID: RAMP2-AS1:6 
HGNC Gene Symbol: RAMP2-AS1    
HGNC Full Gene Name: RAMP2 antisense RNA 1
Ensembl Gene ID: ENSG00000197291
Ensembl Transcript ID: ENST00000587694
Location (hg19): chr17:40905949-40913135
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2117 bp
Exons: 3
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT053763; ENST00000587694.1; ENST00000587694.5
Alternative gene names: ENSG00000197291.4; RAMP2-AS1; ENSG00000197291.8;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -4.6603 non-coding 
CPAT coding probability 9.47% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAMP2-AS1:6 no no no no

Available literature

  1. Liu (2016), The Potential Roles of Long Noncoding RNAs (lncRNA) in Glioblastoma Development., Mol. Cancer Ther.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-AC100793.1-1:6
4.0 RAMP2-AS1:6
4.1 RAMP2-AS1:6
5.0 RAMP2-AS1:6
5.1 RAMP2-AS1:6
5.2 RAMP2-AS1:6