Transcript: RAP2C-AS1:3

Basic information

LNCipedia transcript ID: RAP2C-AS1:3 
LNCipedia gene ID: RAP2C-AS1
Location (hg19): chrX:131352535-131566890
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 3474 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4
Alternative transcript names: ENST00000441399.1; RP5-842K24.2-002; OTTHUMT00000058317.1; NONHSAT138564
Alternative gene names: ENSG00000232160.1; RP5-842K24.2; OTTHUMG00000022425.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -41.0976 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RAP2C-AS1:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-MST4.1-1:2
4.0 RAP2C-AS1:3
4.1 RAP2C-AS1:3
5.0 RAP2C-AS1:3
5.1 RAP2C-AS1:3
5.2 RAP2C-AS1:3