Transcript: RASGRF2-AS1:11

Basic information

LNCipedia transcript ID: RASGRF2-AS1:11 
LNCipedia gene ID: RASGRF2-AS1
Location (hg19): chr5:80243516-80257146
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1371 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000251450.1|HBMT00001164425.1
Alternative gene names: CTC-459I6.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 70.0278 coding 
CPAT coding probability 37.45% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
RASGRF2-AS1:11 no no no no

Available literature

  1. Singh (2016), Investigation of novel LPS-induced differentially expressed long non-coding RNAs in endothelial cells., Mol. Cell. Biochem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RASGRF2-AS1:11
5.0 RASGRF2-AS1:11
5.1 RASGRF2-AS1:11
5.2 RASGRF2-AS1:11