Transcript: RBM15-AS1:22

Basic information

LNCipedia transcript ID: RBM15-AS1:22 
LNCipedia gene ID: RBM15-AS1
Location (hg19): chr1:110825221-110881778
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 33092 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000227963.1|ENCT00000030001.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 32.161 non-coding 
CPAT coding probability 5.78% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RBM15-AS1:22 no no no no

Available literature

  1. Tran (2016), The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation., EMBO Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 lnc-SLC16A4-1:6
5.0 lnc-SLC16A4-1:6
5.1 RBM15-AS1:6
5.2 RBM15-AS1:22