Transcript: RBM15-AS1:27

Basic information

LNCipedia transcript ID: RBM15-AS1:27 
LNCipedia gene ID: RBM15-AS1
Location (hg19): chr1:110835097-110881727
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 260 bp
Exons: 3
Sources: Broad Institute
Alternative transcript names: TCONS_00001624
Alternative gene names: XLOC_000957; linc-ALX3-2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RBM15-AS1:27 yes no no no

Available literature

  1. Tran (2016), The AS-RBM15 lncRNA enhances RBM15 protein translation during megakaryocyte differentiation., EMBO Rep.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC16A4-1:3
3.1 lnc-SLC16A4-1:3
4.0 lnc-SLC16A4-1:3
4.1 lnc-SLC16A4-1:3
5.0 lnc-SLC16A4-1:3
5.1 RBM15-AS1:11
5.2 RBM15-AS1:27