Transcript: RERG-AS1:1

Basic information

LNCipedia transcript ID: RERG-AS1:1 
HGNC Gene Symbol: RERG-AS1    
HGNC Full Gene Name: RERG antisense RNA 1
Ensembl Gene ID: ENSG00000255660
Ensembl Transcript ID: ENST00000541243
RefSeq ID: NR_046559
Location (hg19): chr12:15304857-15308217
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 337 bp
Exons: 3
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000541243; ENST00000541243.1; RERG-AS1-001; OTTHUMT00000400893.1; NONHSAT027110; NR_046559.1
Alternative gene names: ENSG00000255660; RERG-AS1; ENSG00000255660.1; OTTHUMG00000168747.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -269.0259 non-coding 
CPAT coding probability 0.68% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RERG-AS1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-PTPRO-1:1
3.1 lnc-PTPRO-1:1
4.0 RERG-AS1:1
4.1 RERG-AS1:1
5.0 RERG-AS1:1
5.1 RERG-AS1:1
5.2 RERG-AS1:1