Transcript: RFX3-AS1:16

Basic information

LNCipedia transcript ID: RFX3-AS1:16 
LNCipedia gene ID: RFX3-AS1
Location (hg19): chr9:3528671-3529426
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 640 bp
Exons: 2
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000232104.2|FTMT23500036171.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -16.2828 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:16 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RFX3-AS1:16
5.0 RFX3-AS1:16
5.1 RFX3-AS1:16
5.2 RFX3-AS1:16