Transcript: RFX3-AS1:19

Basic information

LNCipedia transcript ID: RFX3-AS1:19 
LNCipedia gene ID: RFX3-AS1
Location (hg19): chr9:3552597-3553312
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 716 bp
Exons: 1
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT130027; FPKM1_group_32589_transcript_1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -31.8087 non-coding 
CPAT coding probability 0.07% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:19 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNV2-13:1
4.0 lnc-KCNV2-13:1
4.1 RFX3-AS1:19
5.0 RFX3-AS1:19
5.1 RFX3-AS1:19
5.2 RFX3-AS1:19