Transcript: RFX3-AS1:21

Basic information

LNCipedia transcript ID: RFX3-AS1:21 
LNCipedia gene ID: RFX3-AS1
Ensembl Gene ID: ENSG00000237359
Ensembl Transcript ID: ENST00000430387
Location (hg19): chr9:3647335-3648338
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 728 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000430387; ENST00000430387.1; RP11-509J21.2-001; OTTHUMT00000051552.1; NONHSAT130029
Alternative gene names: ENSG00000237359; RP11-509J21.2; ENSG00000237359.1; OTTHUMG00000019458.1; ; AL354977.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -161.3211 non-coding 
CPAT coding probability 2.77% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:21 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC1A1-3:1
3.1 lnc-SLC1A1-5:1
4.0 lnc-SLC1A1-5:1
4.1 RFX3-AS1:21
5.0 RFX3-AS1:21
5.1 RFX3-AS1:21
5.2 RFX3-AS1:21