Transcript: RFX3-AS1:6

Basic information

LNCipedia transcript ID: RFX3-AS1:6 
LNCipedia gene ID: RFX3-AS1
RefSeq ID: NR_121586
Location (hg19): chr9:3668086-3691756
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1109 bp
Exons: 5
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_121586; NR_121586.1
Alternative gene names: ; RFX3-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -49.9049 non-coding 
CPAT coding probability 0.56% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RFX3-AS1:6 no no no no

Available literature

  1. Di Salvo (2015), Right ventricular long noncoding RNA expression in human heart failure., Pulm Circ


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-KCNV2-3:6
4.0 RFX3-AS1:6
4.1 RFX3-AS1:6
5.0 RFX3-AS1:6
5.1 RFX3-AS1:6
5.2 RFX3-AS1:6