Transcript: RGMB-AS1:16

Basic information

LNCipedia transcript ID: RGMB-AS1:16 
LNCipedia gene ID: RGMB-AS1
Location (hg19): chr5:98105257-98110158
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1165 bp
Exons: 3
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000246763.2|MICT00000286547.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -137.124 non-coding 
CPAT coding probability 2.31% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RGMB-AS1:16 no no no no

Available literature

  1. Li (2016), Long Noncoding RNA RGMB-AS1 Indicates a Poor Prognosis and Modulates Cell Proliferation, Migration and Invasion in Lung Adenocarcinoma., PLoS ONE
  2. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  3. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 RGMB-AS1:16
5.0 RGMB-AS1:16
5.1 RGMB-AS1:16
5.2 RGMB-AS1:16