Transcript: RGMB-AS1:6

Basic information

LNCipedia transcript ID: RGMB-AS1:6 
LNCipedia gene ID: RGMB-AS1
RefSeq ID: NR_033932
Location (hg19): chr5:98105322-98108788
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2030 bp
Exons: 2
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_033932; NR_033932.1
Alternative gene names: ; RGMB-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -135.032 non-coding 
CPAT coding probability 3.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RGMB-AS1:6 no no no no

Available literature

  1. Li (2016), Long Noncoding RNA RGMB-AS1 Indicates a Poor Prognosis and Modulates Cell Proliferation, Migration and Invasion in Lung Adenocarcinoma., PLoS ONE
  2. Li (2015), Expression of long non-coding RNA DLX6-AS1 in lung adenocarcinoma., Cancer Cell Int.
  3. Li (2015), Study on expression of lncRNA RGMB-AS1 and repulsive guidance molecule b in non-small cell lung cancer., Diagn Pathol


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CHD1-1:7
4.0 RGMB-AS1:6
4.1 RGMB-AS1:6
5.0 RGMB-AS1:6
5.1 RGMB-AS1:6
5.2 RGMB-AS1:6