Transcript: RGPD4-AS1:10

Basic information

LNCipedia transcript ID: RGPD4-AS1:10 
HGNC Gene Symbol: RGPD4-AS1    
HGNC Full Gene Name: RGPD4 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000230651
Ensembl Transcript ID: ENST00000417284
Location (hg19): chr2:108440497-108442257
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 461 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00003363; ENST00000417284.1; AC096655.2-002; OTTHUMT00000330681.1; NONHSAT073078
Alternative gene names: XLOC_002254; linc-ST6GAL2-6; ENSG00000230651.1; AC096655.2; OTTHUMG00000153314.1; ENSG00000230651.3; RGPD4-AS1; ENSG00000230651.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -134.2912 non-coding 
CPAT coding probability 0.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RGPD4-AS1:10 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ST6GAL2-5:3
3.1 lnc-ST6GAL2-5:4
4.0 RGPD4-AS1:10
4.1 RGPD4-AS1:10
5.0 RGPD4-AS1:10
5.1 RGPD4-AS1:10
5.2 RGPD4-AS1:10