Transcript: RGPD4-AS1:7

Basic information

LNCipedia transcript ID: RGPD4-AS1:7 
HGNC Gene Symbol: RGPD4-AS1    
HGNC Full Gene Name: RGPD4 antisense RNA 1 (head to head)
Ensembl Gene ID: ENSG00000230651
Ensembl Transcript ID: ENST00000609972
Location (hg19): chr2:108442341-108442979
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 393 bp
Exons: 2
Sources: Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000609972.1
Alternative gene names: ENSG00000230651.3; RGPD4-AS1; ENSG00000230651.7;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.3813 non-coding 
CPAT coding probability 6.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
RGPD4-AS1:7 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ST6GAL2-5:9
4.0 RGPD4-AS1:7
4.1 RGPD4-AS1:7
5.0 RGPD4-AS1:7
5.1 RGPD4-AS1:7
5.2 RGPD4-AS1:7